Publications

Publications are listed in chronological order.

Identification key: (Lab Members, Graduate Students, Postdocs*, † Staff)

Castillo, N. A., Santos, R. O., James, W. R., Rezek, R., Cerveny, D., Boucek, R. E., . . . Rehage, J. S. (2024). Differential tissue distribution of pharmaceuticals in a wild subtropical marine fish. AQUATIC TOXICOLOGY, 275, 14 pages. doi:10.1016/j.aquatox.2024.107064

Castillo, N. A., James, W. R., Santos, R. O., Rezek, R., Cerveny, D., Boucek, R. E., . . . Rehage, J. S. (2024). Identifying pathways of pharmaceutical exposure in a mesoconsumer marine fish. JOURNAL OF HAZARDOUS MATERIALS, 477, 16 pages. doi:10.1016/j.jhazmat.2024.135382

Jones, B. L. H., Santos, R. O., James, W. R., Costa, S. V., Adams, A. J., Boucek, R. E., . . . Rehage, J. S. (2024). New directions for Indigenous and local knowledge research and application in fisheries science: Lessons from a systematic review. FISH AND FISHERIES, 25(4), 647-671. doi:10.1111/faf.12831

James, W. R., Furman, B. T., Rodemann, J. R., Costa, S. V., Fratto, Z. W., Nelson, J. A., . . . Santos, R. O. (2024). Widespread habitat loss leads to ecosystem-scale decrease in trophic function. GLOBAL CHANGE BIOLOGY, 30(4), 12 pages. doi:10.1111/gcb.17263

Castillo, N. A., James, W. R., Santos, R. O., Rezek, R., Cerveny, D., Boucek, R. E., . . . Rehage, J. S. (2024). Understanding pharmaceutical exposure and the potential for effects in marine biota: A survey of bonefish (Albula vulpes) across the Caribbean Basin. Chemosphere, 349. doi:10.1016/j.chemosphere.2023.140949

Flaherty-Walia, K. E., Gervasi, C. L., Davis, J. P., Trabelsi, S., Fratto, Z., Santos, R. O., . . . Rehage, J. S. (2023). Seines and baited remote underwater video document consistent spatiotemporal patterns in nekton communities of subtropical coastal habitats. MARINE ECOLOGY PROGRESS SERIES, 722, 37-64. doi:10.3354/meps14418

Gervasi, C. L., Karnauskas, M., Rios, A., Santos, R. O., James, W. R., Rezek, R. J., & Rehage, J. S. (2023). Rapid approach for assessing an unregulated fishery using a series of data-limited tools. MARINE AND COASTAL FISHERIES, 15(5), 22 pages. doi:10.1002/mcf2.10270

Calhoun-Grosch, S., Foster, E. M., James, W. R., Santos, R. O., Rehage, J. S., & Nelson, J. A. (2023). Trophic Niche Metrics Reveal Long-Term Shift in Florida Bay Food Webs. ECOSYSTEMS, 26(6), 1183-1194. doi:10.1007/s10021-023-00825-5

Rezek, R. J., Massie, J. A., Nelson, J. A., Santos, R. O., Viadero, N. M., James, W. R., . . . Rehage, J. S. (2023). The effects of temperature and flooding duration on the structure and magnitude of a floodplain prey subsidy. FRESHWATER BIOLOGY, 68(9), 1518-1529. doi:10.1111/fwb.14145

Rodemann, J. R., James, W. R., Rehage, J. S., Baktoft, H., Costa, S., Ellis, R., . . . Santos, R. (2023). Residency and fine-scale habitat use of juvenile goliath grouper (Epinephelus itajara) in a mangrove nursery. BULLETIN OF MARINE SCIENCE, 99(2), 111-117. doi:10.5343/bms.2022.0061

Campbell, L. J., Castillo, N. A., Dunn, C. D., Perez, A., Schmitter-Soto, J. J., Mejri, S. C., . . . Goldberg, T. L. (2023). Viruses of Atlantic Bonefsh (Albula vulpes) in Florida and the Caribbean show geographic patterns consistent with population declines (Aug, 10.1007/s10641-022-01306-9, 2022). ENVIRONMENTAL BIOLOGY OF FISHES, 106(2), 319-320. doi:10.1007/s10641-022-01342-5

Campbell, L. J., Castillo, N. A., Dunn, C. D., Perez, A., Schmitter-Soto, J. J., Mejri, S. C., . . . Goldberg, T. L. (2023). Viruses of Atlantic Bonefish (Albula vulpes) in Florida and the Caribbean show geographic patterns consistent with population declines. ENVIRONMENTAL BIOLOGY OF FISHES, 106(2), 303-317. doi:10.1007/s10641-022-01306-9

Boucek, R. E., Rehage, J. S., Castillo, N. A., Dwoskin, E., Lombardo, S. M., Santos, R., . . . Adams, A. J. (2023). Using recreational tournament records to construct a 53-year time series of the Florida Keys recreational Bonefish fishery. ENVIRONMENTAL BIOLOGY OF FISHES, 106(2), 279-291. doi:10.1007/s10641-022-01299-5

Rezek, R. J., James, W. R., Bautista, V., Zink, I., Rehage, J. S., & Santos, R. O. (2023). Temporal trends of Biscayne Bay pink shrimp fisheries catch, economic indicators, and potential interactions with South Florida recreational flats fisheries. ENVIRONMENTAL BIOLOGY OF FISHES, 106(2), 361-379. doi:10.1007/s10641-022-01314-9

Danylchuk, A. J., Griffin, L. P., Ahrens, R., Allen, M. S., Boucek, R. E., Brownscombe, J. W., . . . Cooke, S. J. (2023). Cascading effects of climate change on recreational marine flats fishes and fisheries (Sept, 10.1007/s10641-022-01333-6, 2022). ENVIRONMENTAL BIOLOGY OF FISHES, 106(2), 417. doi:10.1007/s10641-022-01349-y

Danylchuk, A. J., Griffin, L. P., Ahrens, R., Allen, M. S., Boucek, R. E., Brownscombe, J. W., . . . Cooke, S. J. (2023). Cascading effects of climate change on recreational marine flats fishes and fisheries. ENVIRONMENTAL BIOLOGY OF FISHES, 106(2), 381-416. doi:10.1007/s10641-022-01333-6

Campbell, L. J., Castillo, N. A., Shenker, J., Owens, L. A., Santos, R. O., Adams, A. J., . . . Goldberg, T. L. (2023). Bone appetit: DNA metabarcoding as a non-lethal alternative to morphological dietary assessment in Atlantic bonefish (Albula vulpes). ENVIRONMENTAL BIOLOGY OF FISHES, 106(2), 337-348. doi:10.1007/s10641-022-01328-3

James, W. R., Bautista, V., Rezek, R. J., Zink, I. C., Rehage, J. S., & Santos, R. O. (2023). A review of the potential impacts of commercial inshore pink shrimp fisheries on the recreational flats fishery in Biscayne Bay, FL, USA. ENVIRONMENTAL BIOLOGY OF FISHES, 106(2), 349-360. doi:10.1007/s10641-022-01319-4

Massie, J. A., Santos, R. O., Rezek, R. J., James, W. R., Viadero, N. M., Boucek, R. E., . . . Rehage, J. S. (2022). Primed and cued: long-term acoustic telemetry links interannual and seasonal variations in freshwater flows to the spawning migrations of Common Snook in the Florida Everglades. MOVEMENT ECOLOGY, 10(1), 20 pages. doi:10.1186/s40462-022-00350-5

Gervasi, C. L., Nelson, J. A., Swart, P. K., Santos, R. O., Rezek, R. J., James, W. R., . . . Rehage, J. S. (2022). Otolith stable isotope micro-sampling to discriminate poorly studied stocks: Crevalle Jack in the eastern gulf of Mexico. ESTUARINE COASTAL AND SHELF SCIENCE, 278, 14 pages. doi:10.1016/j.ecss.2022.108130

Rehage, J. S., Boucek, R. E., Santos, R. O., Massie, J. A., Viadero, N. M., & Rezek, R. J. (2022). Untangling Flow-Ecology Relationships: Effects of Seasonal Stage Variation on Common Snook Aggregation and Movement Rates in the Everglades. ESTUARIES AND COASTS, 45(7), 2059-2069. doi:10.1007/s12237-022-01065-x

Gervasi, C. L., Massie, J. A., Rodemann, J., Trabelsi, S., Santos, R. O., & Rehage, J. S. (2022). Recreational Angler Contributions to Fisheries Management Are Varied and Valuable: Case Studies from South Florida. FISHERIES, 47(11), 469-477. doi:10.1002/fsh.10823

James, W. R., Santos, R. O., Rodemann, J. R., Rezek, R. J., Fratto, Z. W., Furman, B. T., . . . Nelson, J. A. (2022). Widespread seagrass die-off has no legacy effect on basal resource use of seagrass food webs in Florida Bay, USA. ICES JOURNAL OF MARINE SCIENCE, 79(6), 1831-1842. doi:10.1093/icesjms/fsac112

Patrick, C. J., Kominoski, J. S., McDowell, W. H., Branoff, B., Lagomasino, D., Leon, M., . . . Zou, X. (2022). A general pattern of trade-offs between ecosystem resistance and resilience to tropical cyclones. SCIENCE ADVANCES, 8(9), 10 pages. doi:10.1126/sciadv.abl9155

Santos, R. O., James, W. R., Nelson, J. A., Rehage, J. S., Serafy, J., Pittman, S. J., & Lirman, D. (2022). Influence of seascape spatial pattern on the trophic niche of an omnivorous fish. ECOSPHERE, 13(2), 18 pages. doi:10.1002/ecs2.3944

James, W. R., Santos, R. O., Rehage, J. S., Doerr, J. C., & Nelson, J. A. (2022). E-scape: Consumer-specific landscapes of energetic resources derived from stable isotope analysis and remote sensing. JOURNAL OF ANIMAL ECOLOGY, 91(2), 381-390. doi:10.1111/1365-2656.13637

Gervasi, C. L., Santos, R. O., Rezek, R. J., James, W. R., Boucek, R. E., Bradshaw, C., . . . Rehage, J. S. (2022). Bottom-up conservation: using translational ecology to inform conservation priorities for a recreational fishery. CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES, 79(1), 47-62. doi:10.1139/cjfas-2021-0024

James, W. R., Topor, Z. M., & Santos, R. O. (2021). Seascape Configuration Influences the Community Structure of Marsh Nekton. ESTUARIES AND COASTS, 44(6), 1521-1533. doi:10.1007/s12237-020-00853-7

Rodemann, J. R., James, W. R., Santos, R. O., Furman, B. T., Fratto, Z. W., Bautista, V., . . . Rehage, J. S. (2021). Impact of Extreme Disturbances on Suspended Sediment in Western Florida Bay: Implications for Seagrass Resilience. FRONTIERS IN MARINE SCIENCE, 8, 13 pages. doi:10.3389/fmars.2021.633240

Pittman, S. J., Yates, K. L., Bouchet, P. J., Alvarez-Berastegui, D., Andrefouet, S., Bell, S. S., . . . Young, M. (2021). Seascape ecology: identifying research priorities for an emerging ocean sustainability science. MARINE ECOLOGY PROGRESS SERIES, 663, 1-29. doi:10.3354/meps13661

Blanchard, J. R., Santos, R. O., & Rehage, J. S. (2021). Sociability interacts with temporal environmental variation to spatially structure metapopulations: A fish dispersal simulation in an ephemeral landscape. ECOLOGICAL MODELLING, 443, 11 pages. doi:10.1016/j.ecolmodel.2021.109458

Hogan, J. A., Feagin, R. A., Starr, G., Ross, M., Lin, T. -C., O’connell, C., . . . Patrick, C. J. (2020). A Research Framework to Integrate Cross-Ecosystem Responses to Tropical Cyclones. BIOSCIENCE, 70(6), 477-489. doi:10.1093/biosci/biaa034

Rezek, R. J., Massie, J. A., Nelson, J. A., Santos, R. O., Viadero, N. M., Boucek, R. E., & Rehage, J. S. (2020). Individual consumer movement mediates food web coupling across a coastal ecosystem. ECOSPHERE, 11(12), 11 pages. doi:10.1002/ecs2.3305

Koval, G., Rivas, N., D’Alessandro, M., Hesley, D., Santos, R., & Lirman, D. (2020). Fish predation hinders the success of coral restoration efforts using fragmented massive corals. PEERJ, 8, 20 pages. doi:10.7717/peerj.9978

Strickland, B. A., Massie, J. A., Viadero, N., Santos, R., Gastrich, K. R., Paz, V., . . . Heithaus, M. R. (2020). Movements of Juvenile Bull Sharks in Response to a Major Hurricane Within a Tropical Estuarine Nursery Area. ESTUARIES AND COASTS, 43(5), 1144-1157. doi:10.1007/s12237-019-00600-7

Massie, J. A., Strickland, B. A., Santos, R. O., Hernandez, J., Viadero, N., Boucek, R. E., . . . Rehage, J. S. (2020). Going Downriver: Patterns and Cues in Hurricane-Driven Movements of Common Snook in a Subtropical Coastal River. ESTUARIES AND COASTS, 43(5), 1158-1173. doi:10.1007/s12237-019-00617-y

Stipek, C., Santos, R., Babcock, E., & Lirman, D. (2020). Modelling the resilience of seagrass communities exposed to pulsed freshwater discharges: A seascape approach. PLOS ONE, 15(2), 15 pages. doi:10.1371/journal.pone.0229147

Santos, R. O., Varona, G., Avila, C. L., Lirman, D., & Collado-Vides, L. (2020). Implications of macroalgae blooms to the spatial structure of seagrass seascapes: The case of the Anadyomene spp. (Chlorophyta) bloom in Biscayne Bay, Florida. MARINE POLLUTION BULLETIN, 150, 12 pages. doi:10.1016/j.marpolbul.2019.110742

Eggenberger, C. W., Santos, R. O., Frankovich, T. A., James, W. R., Madden, C. J., Nelson, J. A., & Rehage, J. S. (2019). Coupling telemetry and stable isotope techniques to unravel movement: Snook habitat use across variable nutrient environments. FISHERIES RESEARCH, 218, 35-47. doi:10.1016/j.fishres.2019.04.008

Boucek, R. E., Trotter, A. A., Blewett, D. A., Ritch, J. L., Santos, R., Stevens, P. W., . . . Rehage, J. (2019). Contrasting river migrations of Common Snook between two Florida rivers using acoustic telemetry. FISHERIES RESEARCH, 213, 219-225. doi:10.1016/j.fishres.2018.12.017

Kroloff, E. K. N., Heinen, J. T., Braddock, K. N., Rehage, J. S., & Santos, R. O. (2019). Understanding the decline of catch-and-release fishery with angler knowledge: a key informant approach applied to South Florida bonefish. ENVIRONMENTAL BIOLOGY OF FISHES, 102(2), 319-328. doi:10.1007/s10641-018-0812-5

Santos, R. O., Schinbeckler, R., Viadero, N., Larkin, M. F., Rennert, J. J., Shenker, J. M., & Rehage, J. S. (2019). Linking bonefish (Albula vulpes) populations to nearshore estuarine habitats using an otolith microchemistry approach. ENVIRONMENTAL BIOLOGY OF FISHES, 102(2), 267-283. doi:10.1007/s10641-018-0839-7

Rehage, J. S., Santos, R. O., Kroloff, E. K. N., Heinen, J. T., Lai, Q., Black, B. D., . . . Adams, A. J. (2019). How has the quality of bonefishing changed over the past 40years? Using local ecological knowledge to quantitatively inform population declines in the South Florida flats fishery. ENVIRONMENTAL BIOLOGY OF FISHES, 102(2), 285-298. doi:10.1007/s10641-018-0831-2

Santos, R. O., Rehage, J. S., Kroloff, E. K. N., Heinen, J. E., & Adams, A. J. (2019). Combining data sources to elucidate spatial patterns in recreational catch and effort: fisheries-dependent data and local ecological knowledge applied to the South Florida bonefish fishery. ENVIRONMENTAL BIOLOGY OF FISHES, 102(2), 299-317. doi:10.1007/s10641-018-0828-x

Brownscombe, J. W., Danylchuk, A. J., Adams, A. J., Black, B., Boucek, R., Power, M., . . . Cooke, S. J. (2019). Bonefish in South Florida: status, threats and research needs. ENVIRONMENTAL BIOLOGY OF FISHES, 102(2), 329-348. doi:10.1007/s10641-018-0820-5

Santos, R. O., Lirman, D., Pittman, S. J., & Serafy, J. E. (2018). Spatial patterns of seagrasses and salinity regimes interact to structure marine faunal assemblages in a subtropical bay. MARINE ECOLOGY PROGRESS SERIES, 594, 21-38. doi:10.3354/meps12499

Boucek, R. E., Heithaus, M. R., Santos, R., Stevens, P., & Rehage, J. S. (2017). Can animal habitat use patterns influence their vulnerability to extreme climate events? An estuarine sportfish case study. GLOBAL CHANGE BIOLOGY, 23(10), 4045-4057. doi:10.1111/gcb.13761

Santos, R. O., Rehage, J. S., Adams, A. J., Black, B. D., Osborne, J., & Kroloff, E. K. N. (2017). Quantitative assessment of a data-limited recreational bonefish fishery using a time-series of fishing guides reports. PLOS ONE, 12(9), 19 pages. doi:10.1371/journal.pone.0184776

Santos, R. O., Rehage, J. S., Boucek, R., & Osborne, J. (2016). Shift in recreational fishing catches as a function of an extreme cold event. ECOSPHERE, 7(6), 16 pages. doi:10.1002/ecs2.1335

Santos, R. O., Lirman, D., & Pittman, S. J. (2016). Long-term spatial dynamics in vegetated seascapes: fragmentation and habitat loss in a human-impacted subtropical lagoon. MARINE ECOLOGY-AN EVOLUTIONARY PERSPECTIVE, 37(1), 200-214. doi:10.1111/maec.12259

Lirman, D., Thyberg, T., Santos, R., Schopmeyer, S., Drury, C., Collado-Vides, L., . . . Serafy, J. (2014). SAV Communities of Western Biscayne Bay, Miami, Florida, USA: Human and Natural Drivers of Seagrass and Macroalgae Abundance and Distribution Along a Continuous Shoreline. ESTUARIES AND COASTS, 37(5), 1243-1255. doi:10.1007/s12237-014-9769-6

Santos, R. O., & Lirman, D. (2012). Using habitat suitability models to predict changes in seagrass distribution caused by water management practices. CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES, 69(8), 1380-1388. doi:10.1139/F2012-018

Santos, R. O., Lirman, D., & Serafy, J. E. (2011). Quantifying freshwater-induced fragmentation of submerged aquatic vegetation communities using a multi-scale landscape ecology approach. MARINE ECOLOGY PROGRESS SERIES, 427, 233-246. doi:10.3354/meps08996

Lirman, D., Thyberg, T., Herlan, J., Hill, C., Young-Lahiff, C., Schopmeyer, S., . . . Drury, C. (2010). Propagation of the threatened staghorn coral Acropora cervicornis: methods to minimize the impacts of fragment collection and maximize production. CORAL REEFS, 29(3), 729-735. doi:10.1007/s00338-010-0621-6